Tools, platforms & repositories

Software

Explore the lab’s research software, semantic technologies, standards resources, biomedical data infrastructure, and supporting repositories.

Bukhari Lab GitHub

Related research

Featured software

CEDAR OnDemand

A browser extension that enables ontology-based scientific metadata entry through existing web repository submission forms.

Ontology-Based Scientific MetadataFeatured Software

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Primary portfolio

Research Software & Platforms

Core tools, platforms, standards, and research code associated with the lab’s current public portfolio.

Research Platform

MediLoom

Biomedical Knowledge Graphs

Automated biomedical knowledge graph generation and enrichment using biomedical ontologies and embedding-based inference.

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Research Software

Burnout Surveillance AI

Clinical Natural Language Processing

Research code supporting narrative-based natural language processing and machine learning for clinician burnout surveillance.

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Research Platform

Semantically

Medical Coding and Semantic Content

A platform supporting trustworthy medical-code recommendation and biomedical semantic content authoring.

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Research Platform

KG-4Bio

Biomedical Knowledge Representation

Knowledge graph-based recommendation infrastructure for biomedical semantic content authoring.

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Research Software

Deep-FLAIM

Critical Care Prediction

Deep-learning research code for early mortality prediction in trauma patients admitted to intensive care.

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Standards Resource

AIRR Standards

Biomedical Data Standards

MiAIRR standards resources supporting reproducible reporting and sharing of adaptive immune receptor repertoire data.

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Authoring Tool

goSemantically

Semantic Biomedical Publishing

A Google Docs add-on for creating semantically enriched biomedical content.

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Research directory

Additional Research Repositories

Additional repositories supporting predictive modeling, immunology data standards, scientific metadata, biomedical ontologies, and semantic technologies.

syAI4ML PIMA Machine Learning · Research Repository Linked IM Linked Immunology · Research Repository Disease Prediction Models Predictive Modeling · Research Repository Annotatia Biomedical Annotation · Research Repository Lyme Detector Disease Detection · Research Repository CEDAR Submission Server Scientific Metadata Infrastructure · Supporting Repository Project AIRR Immune Repertoire Data · Standards Repository AIRR Formats Immune Repertoire Data · Data Models and Formats Immunological Standards Mapping Immunology Data Standards · Standards Repository Ontology Lookup Service Ontology Infrastructure · Supporting Repository BIM: Biomedical Image Ontology Biomedical Ontologies · Ontology Repository BioNLP-SADI Biomedical Text Mining · Research Framework

Supporting infrastructure

Legacy & Supporting Repositories

Research-facing utilities and semantic-web repositories connected to the lab’s broader technical history.

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Support Tools Research Utilities Open Link Health Census Linked Health Data Bio-Ont Biomedical Ontologies SEBI Semantic Biomedical Infrastructure DataFAQs Linked Data Quality SWOWS Semantic Web Systems Graphite RDF Utilities Talend for Semantic Web Semantic Web Integration Sesame Loader RDF Data Loading