Research Platform
MediLoom
Biomedical Knowledge Graphs
Automated biomedical knowledge graph generation and enrichment using biomedical ontologies and embedding-based inference.
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Software
Explore the lab’s research software, semantic technologies, standards resources, biomedical data infrastructure, and supporting repositories.
Featured software
Semantically
An open-source framework for structured, ontology-enriched biomedical content authoring and Web publishing, documented in its peer-reviewed system paper.
View repositoryPrimary portfolio
Research Software & Platforms
Core tools, platforms, standards, and research code associated with the lab’s current public portfolio.
Research Software
Burnout Surveillance AI
Clinical Natural Language Processing
Research code supporting narrative-based natural language processing and machine learning for clinician burnout surveillance.
View resourceResearch Platform
KG-4Bio
Biomedical Knowledge Representation
Knowledge graph-based recommendation infrastructure for biomedical semantic content authoring.
View resourceStandards Resource
AIRR Standards
Biomedical Data Standards
MiAIRR standards resources supporting reproducible reporting and sharing of adaptive immune receptor repertoire data.
View resourceAuthoring Tool
goSemantically
Semantic Biomedical Publishing
A Google Docs add-on for creating semantically enriched biomedical content.
View resourceResearch directory
Additional Research Repositories
Additional repositories supporting predictive modeling, immunology data standards, scientific metadata, biomedical ontologies, and semantic technologies.
syAI4ML PIMA
Machine Learning · Research Repository
CEDAR Submission Server
Scientific Metadata Infrastructure · Supporting Repository
Project AIRR
Immune Repertoire Data · Standards Repository
AIRR Formats
Immune Repertoire Data · Data Models and Formats
Immunological Standards Mapping
Immunology Data Standards · Standards Repository
Ontology Lookup Service
Ontology Infrastructure · Supporting Repository
BIM: Biomedical Image Ontology
Biomedical Ontologies · Ontology Repository
BioNLP-SADI
Biomedical Text Mining · Research Framework
Supporting infrastructure
Legacy & Supporting Repositories
Research-facing utilities and semantic-web repositories connected to the lab’s broader technical history.
Support Tools
Research Utilities
Open Link Health Census
Linked Health Data
Bio-Ont
Biomedical Ontologies
SEBI
Semantic Biomedical Infrastructure
DataFAQs
Linked Data Quality
SWOWS
Semantic Web Systems
Graphite
RDF Utilities
Talend for Semantic Web
Semantic Web Integration
Sesame Loader
RDF Data Loading