FHIRTrustBench: A Benchmark for Interoperability-Driven Clinical AI Readiness and Trustworthiness
A benchmark for assessing FHIR-based clinical AI readiness across complementary interoperability and trustworthiness dimensions.
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Papers
Explore the lab’s publications across benchmarking, trustworthy clinical AI, biomedical knowledge engineering, predictive analytics, and semantic interoperability.
Benchmarking
Benchmarking & Evaluation
Benchmark-oriented scholarship evaluating clinical AI readiness, interoperability, and biomedical data infrastructure.
How Representative Is a SPARQL Benchmark? An Analysis of RDF Triplestore Benchmarks
A peer-reviewed analysis of SPARQL benchmark representativeness, RDF workloads, and triplestore performance characteristics.
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Benchmarking research in progress
The lab continues to expand its benchmarking portfolio across clinical AI and biomedical data infrastructure.
Research highlights
Selected Recent Work
Graph-Constrained Policy Learning for Extreme Clinical Code Prediction
Models ICD-10-CM prediction as graph-constrained traversal through a pruned code hierarchy.
Read paperEarly Prediction of Multi-Label Care Escalation Triggers in the Intensive Care Unit Using Electronic Health Records
Predicts multiple care-escalation triggers using the first 24 hours of ICU electronic health record data.
Read paperA Machine Learning Framework for Pathway-Driven Therapeutic Target Discovery in Metabolic Disorders
Combines predictive modeling with pathway mapping to study metabolic-disorder risk and potential therapeutic targets.
Read paperA Narrative-Driven Computational Framework for Clinician Burnout Surveillance
Uses ICU clinical narratives, lexical stress signals, topic modeling, and workload proxies to support burnout surveillance research.
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All Publications
63 publications
Newest first
Clinical & Health AI
2026
Graph-Constrained Policy Learning for Extreme Clinical Code Prediction
arXiv
15 Jul 2026
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Clinical & Health AI
2026
FHIRTrustBench: A Benchmark for Interoperability-Driven Clinical AI Readiness and Trustworthiness
openRxiv
13 Jul 2026
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Clinical & Health AI
2026
A Narrative-Driven Computational Framework for Clinician Burnout Surveillance
The International FLAIRS Conference Proceedings
06 May 2026
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Clinical & Health AI
2026
Digital Biomarkers for Early Detection of Alzheimer’s Disease: A Comprehensive Review and Bibliometric Analysis
Journal of Dementia and Alzheimer's Disease
03 Apr 2026
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Machine Learning
2025
A Machine Learning Framework for Pathway-Driven Therapeutic Target Discovery in Metabolic Disorders
arXiv
24 Sep 2025
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Clinical & Health AI
2025
Early Prediction of Multi-Label Care Escalation Triggers in the Intensive Care Unit Using Electronic Health Records
arXiv
24 Sep 2025
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Clinical & Health AI
2025
Correction: Zafar et al. Skin Lesion Analysis and Cancer Detection Based on Machine/Deep Learning Techniques: A Comprehensive Survey. Life 2023, 13, 146
Life
18 Feb 2025
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Biomedical Data
2023
Introduction to the Special Issue on DNA-centric Modeling and Practice for Next-generation Computing and Communication Systems
ACM Transactions on Multimedia Computing, Communications, and Applications
27 Sep 2023
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Semantic Web
2023
Enhancing Biomedical Semantic Annotations through a Knowledge Graph-Based Approach
The International FLAIRS Conference Proceedings
08 May 2023
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Biomedical Data
2023
[no title information]
The International FLAIRS Conference Proceedings
08 May 2023
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Clinical & Health AI
2023
Skin Lesion Analysis and Cancer Detection Based on Machine/Deep Learning Techniques: A Comprehensive Survey
Life
04 Jan 2023
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Semantic Web
2023
A Decentralized Environment for Biomedical Semantic Content Authoring and Publishing
Communications in Computer and Information Science
01 Jan 2023
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Machine Learning
2022
Classification of Brain Tumor from Magnetic Resonance Imaging Using Vision Transformers Ensembling
Current Oncology
07 Oct 2022
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Clinical & Health AI
2022
Detection of Cardiovascular Disease Based on PPG Signals Using Machine Learning with Cloud Computing
Computational Intelligence and Neuroscience
04 Aug 2022
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Semantic Web
2022
HO2IEV: Heavyweight ontology based web information extraction technique for visionless users
Proceedings - 7th International Conference on Networked Computing and Advanced Information Management, NCM 2011
25 May 2022
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Semantic Web
2022
SEBI: An architecture for biomedical image discovery, interoperability and reusability based on semantic enrichment
CEUR Workshop Proceedings
25 May 2022
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Semantic Web
2022
ICyrus: A semantic framework for biomedical image discovery
CEUR Workshop Proceedings
25 May 2022
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Semantic Web
2022
BIM: An open ontology for the annotation of biomedical images
CEUR Workshop Proceedings
25 May 2022
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Machine Learning
2022
Exploration of Black Boxes of Supervised Machine Learning Models: A Demonstration on Development of Predictive Heart Risk Score
Computational Intelligence and Neuroscience
12 May 2022
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Biomedical Data
2021
Neuromechanical Signal-Based Parallel and Scalable Model for Lower Limb Movement Recognition
IEEE Sensors Journal
15 Jul 2021
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Machine Learning
2021
Detection and Prediction of Diabetes Using Data Mining: A Comprehensive Review
IEEE Access
01 Jan 2021
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Clinical & Health AI
2020
Modifiable Risk Factors and Overall Cardiovascular Mortality: Moderation of Urbanization
Journal of Public Health Research
14 Oct 2020
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Clinical & Health AI
2020
Multimodal Brain Tumor Classification Using Deep Learning and Robust Feature Selection: A Machine Learning Application for Radiologists
Diagnostics
06 Aug 2020
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Machine Learning
2020
LDA–GA–SVM: improved hepatocellular carcinoma prediction through dimensionality reduction and genetically optimized support vector machine
Neural Computing and Applications
10 Jul 2020
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Biomedical Data
2020
D4: Deep Drug-drug interaction Discovery and Demystification
openRxiv
09 Apr 2020
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Clinical & Health AI
2020
Integrated design of deep features fusion for localization and classification of skin cancer
Pattern Recognition Letters
01 Mar 2020
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Clinical & Health AI
2020
Machine Learning Can Predict Deaths in Patients with Diverticulitis During their Hospital Stay
openRxiv
07 Feb 2020
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Biomedical Data
2020
Developed Newton-Raphson based deep features selection framework for skin lesion recognition
Pattern Recognition Letters
01 Jan 2020
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Machine Learning
2019
Fish-Pak: Fish species dataset from Pakistan for visual features based classification
Data in Brief
01 Dec 2019
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Clinical & Health AI
2019
A citrus fruits and leaves dataset for detection and classification of citrus diseases through machine learning
Data in Brief
01 Oct 2019
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Clinical & Health AI
2019
A Hybrid Machine Learning Framework to Predict Early Risk of Mortality in Paralytic Ileus Patients using Electronic Health Records
openRxiv
16 Sep 2019
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Semantic Web
2019
Lungs Nodule Detection Using Semantic Segmentation and Classification with Optimal Features
MDPI AG
14 Sep 2019
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Semantic Web
2019
How Representative Is a SPARQL Benchmark? An Analysis of RDF Triplestore Benchmarks
The World Wide Web Conference
13 May 2019
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Semantic Web
2019
A comprehensive review of type-2 fuzzy Ontology
Artificial Intelligence Review
01 Mar 2019
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Semantic Web
2019
Semantic enrichment and similarity approximation for biomedical sequence images
Publication
15 Jan 2019
Semantic Web
2018
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata
BMC Bioinformatics
16 Jul 2018
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Semantic Web
2018
Ontology Learning: Information Logistic
Publication
02 Jul 2018
Semantic Web
2018
Incorporation of Fuzzy Theory with Heavyweight Ontology and Its Application on Vague Information Retrieval for Decision Making
International Journal of Fuzzy Logic and Intelligent Systems
02 Jul 2018
Semantic Web
2018
Personalized Information Seeking Powered by Mobile Ontology for Sightless Residents of under Developing States
International Journal of Computer and Communication Engineering (IJCCE)
02 Jul 2018
Semantic Web
2018
Towards interoperable bioNLP semantic web services using the SADI framework
International Conference on Data Integration in the Life Sciences
02 Jul 2018
Clinical & Health AI
2018
The Canadian health census as Linked Open Data: towards policy making in public health
Data Integration in the Life Sciences
02 Jul 2018
Semantic Web
2018
Personalized Information Seeking Powered by Mobile Ontology for Sightless Residents of under Developing States
Publication
02 Jul 2018
Machine Learning
2018
An intelligent real-time multi-vessel collision risk assessment system from VTS view point based on fuzzy inference system
Expert systems with applications
02 Jul 2018
Semantic Web
2018
SEBI: An Architecture for Biomedical Image Discovery, Interoperability and Reusability Based on Semantic Enrichment.
International SWAT4LS 2014
02 Jul 2018
Semantic Web
2018
Next-generation semantic search platform for biomedical images
5th Atlantic Workshop on Semantics and Services February 24, 2014, Saint John, New Brunswick, Canada
02 Jul 2018
Semantic Web
2018
An Interoperable Framework for Biomedical Image Retrieval and Knowledge Discovery
Conference on Semantics in Healthcare and Life Sciences 2014
02 Jul 2018
Clinical & Health AI
2018
The center for expanded data annotation and retrieval
Journal of the American Medical Informatics Association
02 Jul 2018
Semantic Web
2018
Biomedical Image Ontology on BioPortal.
https://bioportal.bioontology.org/ontologies/BIM
02 Jul 2018
Immunology
2018
Towards Ontological Mapping of Immunological Data Standards
BioOntologies 2016
02 Jul 2018
Clinical & Health AI
2018
Role of Telemedicine in Developed and Under-Developed Countries
IEEE Internet Initiative
02 Jul 2018
Semantic Web
2018
Leveraging the CEDAR Workbench for Ontology-linked Submission of Adaptive Immune Receptor Repertoire Data to the Sequence Read Archive (SRA)
Publication
02 Jul 2018
Immunology
2018
Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data
Frontiers in Immunology
02 Jul 2018
Immunology
2018
Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data
Nature immunology
02 Jul 2018
Semantic Web
2018
Semantic Web in the Age of Big Data: A Perspective
Center for Open Science
12 Jun 2018
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Immunology
2017
Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data
Nature Immunology
16 Nov 2017
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Immunology
2017
Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data
Frontiers in Immunology
01 Nov 2017
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Semantic Web
2014
An Obstacle Recognizing Mechanism for Autonomous Underwater Vehicles Powered by Fuzzy Domain Ontology and Support Vector Machine
Mathematical Problems in Engineering
01 Jan 2014
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Machine Learning
2013
An intelligent real-time multi-vessel collision risk assessment system from VTS view point based on fuzzy inference system
Expert Systems with Applications
01 Mar 2013
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Semantic Web
2013
Towards Interoperable BioNLP Semantic Web Services Using the SADI Framework
Lecture Notes in Computer Science
01 Jan 2013
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Semantic Web
2012
Integration of a secure type-2 fuzzy ontology with a multi-agent platform: A proposal to automate the personalized flight ticket booking domain
Information Sciences
01 Sep 2012
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Semantic Web
2012
A research on an intelligent multipurpose fuzzy semantic enhanced 3D virtual reality simulator for complex maritime missions
Applied Intelligence
08 Jul 2012
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Semantic Web
2011
Exploiting the Heavyweight Ontology with Multi-Agent System Using Vocal Command System: A Case Study on E-Mall
International Journal of Advancements in Computing Technology
31 Jul 2011
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Semantic Web
2011
Ontology-assisted automatic precise information extractor for visually impaired inhabitants
Artificial Intelligence Review
26 May 2011
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Connected portfolio
From Publications to Research Infrastructure
Explore the projects, repositories, standards, and tools connected to the lab’s scholarly work.